Publications

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J
Joyce AR, Reed JL, White A, Edwards R, Osterman AL, Baba T, Mori H, Lesely SA, Palsson BØ, Agarwalla S.  2006.  Experimental and computational assessment of conditionally essential genes in Escherichia coli.. Journal of bacteriology. 188(23):8259-71.
Joyce AR, Palsson BØ.  2008.  Predicting gene essentiality using genome-scale in silico models.. Methods in molecular biology (Clifton, N.J.). 416:433-57.
Joyce AR, Palsson BØ.  2007.  Toward whole cell modeling and simulation: comprehensive functional genomics through the constraint-based approach.. Progress in drug research. Fortschritte der Arzneimittelforschung. Progrès des recherches pharmaceutiques. 64:265,267-309.
Joyce AR, Palsson BØ.  2006.  The model organism as a system: integrating 'omics' data sets.. Nature reviews. Molecular cell biology. 7(3):198-210.
Johannsson F, Guðmundsson S, Paglia G, Guðmundsson S, Palsson B, Sigurjónsson OE, Rolfsson O.  2018.  Systems analysis of metabolism in platelet concentrates during storage in platelet additive solution.. Biochem J. 475(13):2225-2240.
Javanmardian M, Palsson BØ.  1992.  Continuous photoautotrophic cultures of the eukaryotic alga Chlorella vulgaris can exhibit stable oscillatory dynamics.. Biotechnology and bioengineering. 39(5):487-97.
Jamshidi N, Palsson BØ.  2006.  Systems biology of SNPs.. Molecular systems biology. 2:38.
Jamshidi N, Palsson BØ.  2008.  Formulating genome-scale kinetic models in the post-genome era.. Molecular systems biology. 4:171.
Jamshidi N, Palsson BØ.  2010.  Mass action stoichiometric simulation models: incorporating kinetics and regulation into stoichiometric models.. Biophysical journal. 98(2):175-85.
Jamshidi N, Edwards JS, Fahland T, Church GM, Palsson BØ.  2001.  Dynamic simulation of the human red blood cell metabolic network.. Bioinformatics (Oxford, England). 17(3):286-7.
Jamshidi N, Palsson BØ.  2008.  Top-down analysis of temporal hierarchy in biochemical reaction networks.. PLoS computational biology. 4(9):e1000177.
Jamshidi N, Palsson BØ.  2007.  Investigating the metabolic capabilities of Mycobacterium tuberculosis H37Rv using the in silico strain iNJ661 and proposing alternative drug targets.. BMC systems biology. 1:26.
Jamshidi N, Palsson BØ.  2009.  Using in silico models to simulate dual perturbation experiments: procedure development and interpretation of outcomes.. BMC systems biology. 3:44.
Jamshidi N, Palsson BØ.  2006.  Systems biology of the human red blood cell.. Blood cells, molecules & diseases. 36(2):239-47.
Jamshidi N, Vo TD, Palsson BØ.  2007.  In silico analysis of SNPs and other high-throughput data.. Methods in molecular biology (Clifton, N.J.). 366:267-85.
Jamshidi N, Wiback SJ, Palsson BØ.  2002.  In silico model-driven assessment of the effects of single nucleotide polymorphisms (SNPs) on human red blood cell metabolism.. Genome research. 12(11):1687-92.
Jamshidi N, Palsson BØ.  2009.  Flux-concentration duality in dynamic nonequilibrium biological networks.. Biophysical journal. 97(5):L11-3.

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