Publications

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H
Hyduke DR, Lewis NE, Palsson BØ.  2013.  Analysis of omics data with genome-scale models of metabolism.. Mol Biosyst. 9(2):167-74.
Hyduke DR, Palsson BØ.  2010.  Towards genome-scale signalling network reconstructions.. Nature reviews. Genetics. 11(4):297-307.
Hwang K-S, Kim H U, Charusanti P, Palsson BØ, Lee S Y.  2013.  Systems biology and biotechnology of Streptomyces species for the production of secondary metabolites.. Biotechnol Adv. 32(2):255-268.
Hubbell JA, Palsson BØ, Papoutsakis ET.  1994.  Preface. Tissue engineering and cell therapies.. Biotechnology and bioengineering. 43(7):541.
Hubbell JA, Palsson BØ, Papoutsakis ET.  1994.  Preface: Tissue engineering and cell therapies: II.. Biotechnology and bioengineering. 43(8):683.
Huang T-W, Lam I, Chang H-Y, Tsai S-F, Palsson BO, Charusanti P.  2014.  Capsule deletion via a lamda-Red knockout system perturbs biofilm formation and fimbriae expression in Klebsiella pneumoniae MGH 78578.. BMC Res Notes. 7(1):13.
Huang S, Law P, Francis K, Palsson BØ, Ho AD.  1999.  Symmetry of initial cell divisions among primitive hematopoietic progenitors is independent of ontogenic age and regulatory molecules.. Blood. 94(8):2595-604.
Hua Q, Joyce AR, Fong S, Palsson BØ.  2006.  Metabolic analysis of adaptive evolution for in silico-designed lactate-producing strains.. Biotechnology and bioengineering. 95(5):992-1002.
Hua Q, Joyce AR, Palsson BØ, Fong S.  2007.  Metabolic characterization of Escherichia coli strains adapted to growth on lactate.. Applied and environmental microbiology. 73(14):4639-47.
Honisch C, Raghunathan A, Cantor CR, Palsson BØ, van den Boom D.  2004.  High-throughput mutation detection underlying adaptive evolution of Escherichia coli-K12.. Genome research. 14(12):2495-502.
Holloway W, Martinez AR, Oh DJ, Francis K, Ramakrishna R, Palsson BØ.  1999.  Key adhesion molecules are present on long podia extended by hematopoietic cells.. Cytometry. 37(3):171-7.
Ho Sui SJ, Lo R, Fernandes AR, Caulfield MDG, Lerman JA, Xie L, Bourne PE, Baillie DL, Brinkman FSL.  2012.  Raloxifene attenuates Pseudomonas aeruginosa pyocyanin production and virulence.. Int J Antimicrob Agents.
Herring CD, Raghunathan A, Honisch C, Patel T, Applebee KM, Joyce AR, Albert TJ, Blattner FR, van den Boom D, Cantor CR et al..  2006.  Comparative genome sequencing of Escherichia coli allows observation of bacterial evolution on a laboratory timescale.. Nature genetics. 38(12):1406-12.
Herring CD, Raffaelle M, Allen TE, Kanin EI, Landick R, Ansari AZ, Palsson BØ.  2005.  Immobilization of Escherichia coli RNA polymerase and location of binding sites by use of chromatin immunoprecipitation and microarrays.. Journal of bacteriology. 187(17):6166-74.
Herring CD, Palsson BØ.  2007.  An evaluation of Comparative Genome Sequencing (CGS) by comparing two previously-sequenced bacterial genomes.. BMC genomics. 8:274.
Herrgard MJ, Swainston N, Dobson P, Dunn WB, Arga YK, Arvas M, Blüthgen N, Borger S, Costenoble R, Heinemann M et al..  2008.  A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology.. Nature biotechnology. 26(10):1155-60.
Herrgard MJ, Fong S, Palsson BØ.  2006.  Identification of genome-scale metabolic network models using experimentally measured flux profiles.. PLoS computational biology. 2(7):e72.
Herrgard MJ, Covert MW, Palsson BØ.  2003.  Reconciling gene expression data with known genome-scale regulatory network structures.. Genome research. 13(11):2423-34.
Herrgard MJ, Palsson BØ.  2005.  Untangling the web of functional and physical interactions in yeast.. Journal of biology. 4(2):5.
Herrgard MJ, Covert MW, Palsson BØ.  2004.  Reconstruction of microbial transcriptional regulatory networks.. Current opinion in biotechnology. 15(1):70-7.
Herrgard MJ, Palsson BØ.  2004.  Flagellar biosynthesis in silico: building quantitative models of regulatory networks.. Cell. 117(6):689-90.
Herrgard MJ, Lee B-S, Portnoy VA, Palsson BØ.  2006.  Integrated analysis of regulatory and metabolic networks reveals novel regulatory mechanisms in Saccharomyces cerevisiae.. Genome research. 16(5):627-35.
Hefzi H, Ang KSiong, Hanscho M, Bordbar A, Ruckerbauer D, Lakshmanan M, Orellana CA, Baycin-Hizal D, Huang Y, Ley D et al..  2016.  A Consensus Genome-scale Reconstruction of Chinese Hamster Ovary Cell Metabolism.. Cell Syst. 3(5):434-443.e8.
Hefzi H., Lewis N.E..  2014.  From random mutagenesis to systems biology in metabolic engineering of mammalian cells. Pharmaceutical Bioprocessing. 2
Heckmann D, Zielinski DC, Palsson BO.  2018.  Modeling genome-wide enzyme evolution predicts strong epistasis underlying catalytic turnover rates. Nature Communications. 9
Heckmann D, Lloyd CJ, Mih N, Ha Y, Zielinski DC, Haiman ZB, Desouki AAmer, Lercher MJ, Palsson BO.  2018.  Machine learning applied to enzyme turnover numbers reveals protein structural correlates and improves metabolic models. Nature Communications. 9
Hanania EG, Fieck A, Stevens J, Bodzin LJ, Palsson BØ, Koller MR.  2005.  Automated in situ measurement of cell-specific antibody secretion and laser-mediated purification for rapid cloning of highly-secreting producers.. Biotechnology and bioengineering. 91(7):872-6.

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