Publications

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D
Duarte NC, Palsson BØ, Fu P.  2004.  Integrated analysis of metabolic phenotypes in Saccharomyces cerevisiae.. BMC genomics. 5:63.
Duarte NC, Becker SA, Jamshidi N, Thiele I, Mo ML, Vo TD, Srivas R, Palsson BØ.  2007.  Global reconstruction of the human metabolic network based on genomic and bibliomic data.. Proceedings of the National Academy of Sciences of the United States of America. 104(6):1777-82.
Duarte NC, Herrgard MJ, Palsson BØ.  2004.  Reconstruction and validation of Saccharomyces cerevisiae iND750, a fully compartmentalized genome-scale metabolic model.. Genome research. 14(7):1298-309.
Du B, Zielinski DC, Palsson BO.  2017.  Topological and Kinetic Determinants of the Modal Matrices of Dynamic Models of Metabolism. bioRxiv.
Du B, Zielinski DC, Kavvas ES, Dräger A, Tan J, Zhang Z, Ruggiero KE, Arzumanyan GA, Palsson BO.  2016.  Evaluation of rate law approximations in bottom-up kinetic models of metabolism.. BMC Syst Biol. 10(1):40.
Du B, Zielinski DC, Monk JM, Palsson BO.  2018.  Thermodynamic favorability and pathway yield as evolutionary tradeoffs in biosynthetic pathway choice. Proceedings of the National Academy of Sciences.
Du B, Zhang Z, Grubner S, Yurkovich JT, Palsson BO, Zielinski DC.  2018.  Temperature-Dependent Estimation of Gibbs Energies Using an Updated Group-Contribution Method.. Biophys J. 114(11):2691-2702.
Du B, Zielinski DC, Palsson BO.  2018.  Estimating Metabolic Equilibrium Constants: Progress and Future Challenges. Trends in Biochemical Sciences.
Dräger A, Zielinski DC, Keller R, Rall M, Eichner J, Palsson BO, Zell A.  2015.  SBMLsqueezer 2: context-sensitive creation of kinetic equations in biochemical networks.. BMC Syst Biol. 9(1):68.
Dräger A, Palsson BØ.  2014.  Improving collaboration by standardization efforts in systems biology.. Front Bioeng Biotechnol. 2:61.
Dinh HV, King ZA, Palsson BO, Feist AM.  2018.  Identification of growth-coupled production strains considering protein costs and kinetic variability. Metabolic Engineering Communications. 7:e00080.
D'Alessandro A, Nemkov T, Yoshida T, Bordbar A, Palsson BO, Hansen KC.  2016.  Citrate metabolism in red blood cells stored in additive solution-3.. Transfusion. 57(2):325-336.

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