Publications

Author Title [ Year(Asc)]
Filters: Author is Palsson, Bernhard O.  [Clear All Filters]
2018
Brunk E, Chang RL, Xia J, Hefzi H, Yurkovich JT, Kim D, Buckmiller E, Wang HH, Cho B-K, Yang C et al..  2018.  Characterizing posttranslational modifications in prokaryotic metabolism using a multiscale workflow. Proceedings of the National Academy of Sciences.
Rowe E, Palsson BO, King ZA.  2018.  Escher-FBA: a web application for interactive flux balance analysis. BMC Systems Biology.
Du B, Zielinski DC, Palsson BO.  2018.  Estimating Metabolic Equilibrium Constants: Progress and Future Challenges. Trends in Biochemical Sciences.
McCloskey D, Xu S, Sandberg TE, Brunk E, Hefner Y, Szubin R, Feist AM, Palsson BO.  2018.  Growth Adaptation of gnd and sdhCB Escherichia coli Deletion Strains Diverges From a Similar Initial Perturbation of the Transcriptome. Frontiers in Microbiology.
Norsigian CJ, Kavvas E, Seif Y, Palsson BO, Monk JM.  2018.  iCN718, an Updated and Improved Genome-Scale Metabolic Network Reconstruction of Acinetobacter baumannii AYE. Frontiers in Genetics. 9
Dinh HV, King ZA, Palsson BO, Feist AM.  2018.  Identification of growth-coupled production strains considering protein costs and kinetic variability. Metabolic Engineering Communications. 7:e00080.
Kavvas ES, Catoiu E, Mih N, Yurkovich JT, Seif Y, Dillon N, Heckmann D, Anand A, Yang L, Nizet V et al..  2018.  Machine learning and structural analysis of Mycobacterium tuberculosis pan-genome identifies genetic signatures of antibiotic resistance. Nature Communications.
Heckmann D, Lloyd CJ, Mih N, Ha Y, Zielinski DC, Haiman ZB, Desouki AAmer, Lercher MJ, Palsson BO.  2018.  Machine learning applied to enzyme turnover numbers reveals protein structural correlates and improves metabolic models. Nature Communications. 9
Fang X, Monk JM, Nurk S, Akseshina M, Zhu Q, Gemmell C, Gianetto-Hill C, Leung N, Szubin R, Sanders J et al..  2018.  Metagenomics-Based, Strain-Level Analysis of Escherichia coli From a Time-Series of Microbiome Samples From a Crohn's Disease Patient. Frontiers in Microbiology.
Heckmann D, Zielinski DC, Palsson BO.  2018.  Modeling genome-wide enzyme evolution predicts strong epistasis underlying catalytic turnover rates. Nature Communications. 9
Choudhary KS, Mih N, Monk J, Kavvas E, Yurkovich JT, Sakoulas G, Palsson BO.  2018.  The Staphylococcus aureus Two-Component System AgrAC Displays Four Distinct Genomic Arrangements That Delineate Genomic Virulence Factor Signatures. Frontiers in Microbiology. 9
Fu W, Gudmundsson S, Wichuk K, Palsson S, Palsson BO, Salehi-Ashtiani K, ólfsson ður.  2018.  Sugar-stimulated CO2 sequestration by the green microalga Chlorella vulgaris. Science of The Total Environment. 654:275-283.
Du B, Zielinski DC, Monk JM, Palsson BO.  2018.  Thermodynamic favorability and pathway yield as evolutionary tradeoffs in biosynthetic pathway choice. Proceedings of the National Academy of Sciences.
Santos-Zavaleta A, Sánchez-Pérez M, Salgado H, Vázquez-Ramírez DA, Gama-Castro S, Tierrafría VH, Busby SJW, Aquino P, Fang X, Palsson BO et al..  2018.  A unified resource for transcriptional regulation in Escherichia coli K-12 incorporating high-throughput-generated binding data into RegulonDB version 10.0. BMC Biology. 16
2017
Chen K, Gao Y, Mih N, Brien EJ ’, Yang L, Palsson BO.  2017.  Thermosensitivity of growth is determined by chaperone-mediated proteome reallocation. Proceedings of the National Academy of Sciences. 377121391183:201705524.

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