### Systems Biology and Bioengineering II:

**Network Reconstruction & Functional States**

*Lecture: Tu/Th 2:00 - 3:30 PM in PFBH 161*

Course Information |
News |
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InstructorDr. Bernhard Ø. PalssonPowell-Focht Bioengineering Hall Room 417 bpalsson@bioeng.ucsd.edu http://systemsbiology.ucsd.edu Teaching AssistantRoger ChangPowell-Focht Bioengineering Hall Room 417 roger.l.chang@gmail.com Syllabus Project Ideas Preliminary Project Report Requirements * Office Hours: Fri 1:00 - 2:00 PM in PFBH 417 * |
3/12: Assignments: Final Exam posted, due by Mon. 3/16 by 6:00pm by email to Roger3/12: Lectures: lecture slides for 3/12 posted3/10: Lectures: lecture slides for 3/10 posted3/6: Resources: Applebee 2009 chapter on adaptive evolution posted (please review before lecture on 3/10)3/5: Lectures: lecture slides for 3/5 posted3/3: Lectures: lecture slides for 3/3 posted2/26: Lectures: lecture slides for 2/26 posted2/26: Assignments: HW6 posted, due by Thurs. 3/5 by midnight by email to Roger2/24: Assignments: HW5 re-posted, due by Fri. 2/27 by midnight PLEASE NOTE NEW OBJECTIVE OF PROBLEM 22/24: Lectures: lecture slides for 2/24 posted2/20: Assignments: HW5 posted, due by Fri. 2/27 by midnight by email to Roger2/19: Lectures: lecture slides for 2/19 posted2/17: Lectures: lecture slides for 2/17 posted2/16: Lectures: lecture slides for all previous lectures updated to current versions2/12: Assignments: current core E.coli model (w/ Nitrogen metabolism) posted2/12: Assignments: HW4 posted, due by Thurs. 2/19 by midnight by email to Roger2/12: Lectures: lecture slides for 2/12 posted2/5: Lectures: lecture slides for 2/5 posted2/4: Lectures: syllabus changed2/3: Lectures: lecture slides for 2/10 posted2/3: Lectures: lecture slides for 2/3 posted2/2: Assignments: HW3 reposted with final slight modification (7:00pm)1/30: Assignments: HW3 reposted with another slight modification (2:20pm)1/29: Lectures: lecture slides for 1/29 posted1/29: Assignments: HW3 reposted with a slight modification (1:45pm)1/29: Assignments: HW3 posted, due by Thurs. 2/5 by midnight by email to Roger1/28: Assignments: change in due date for preliminary reports to 2/12 by midnight1/27: Home: outline for preliminary reports posted1/27: Lectures: lecture slides for 1/27 updated1/25: Lectures: lecture slides for 1/27 posted1/25: Resources: Wiback 2002 and Price 2003 articles on RBC metabolism posted1/24: Assignments: corrected HW2 posted (no need for biomass rxn and typo for binary S matrix corrected)1/22: Resources: Papin 2003 article posted1/22: Lectures: lecture slides for 1/22 posted1/22: Resources: Famili 2003 article posted on SVD1/22: Assignments: HW2 posted, due by Thurs. 1/29 by midnight by email to Roger1/20: Lectures: lecture slides for 1/20 posted1/15: Notice: preliminary project reports will be due on Feb. 5th by midnight by email to Roger1/15: Project Presentations will be on Friday, March 13th 3:15-6:15pm, Fung Auditorium1/15: Lectures: lecture slides for 1/15 posted1/14: Assignments: HW1 posted, due by Thurs. 1/22 by midnight by email to Roger1/13: Lectures: lecture slides and term project slides for 1/13 posted1/12: Lectures: more lecture slides for 1/8 posted1/12: Lectures: Book Chapter 6 posted1/12: Resources: 3 articles posted on human metabolic network/modeling1/12: Project Ideas: revised description of topic #71/9: Office Hours: TA office hours will be Friday 1-2pm in PFBH 4171/8: Resources: posted iAF1260 (genome-scale E. coli model)1/8: Notice: Please email TA with your preference of office hours Tu 12-1, Th 1-2, or Fri 1-21/8: Resources: posted A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information - Feist 20071/8: Lectures: lecture slides for 1/8 posted1/5: Home: List of project ideas posted on front page1/5: Home: Syllabus and 2009 schedule are posted1/5: Updated website for 2009 |