Systems Biology and Bioengineering:
Lecture: Tu/Th 9:30 - 10:50 PM in PFBH 161
Section: W 2:00 - 2:50 PM in CENTER 220
Examples of Dynamic Simulation in Mathematica 5.2
Examples of Dynamic Simulation in Matlab
FBA Primer for the Homework
Resources Mentioned in Class
Systems Biology Articles
Articles that are of general interest to the class:
Nature Review paper by Jennie Reed et al – Towards multidimensional Genome Annotation
Nature Reviews Microbiology paper on Constraints-Based Modeling by Nathan Price et al on genome scale reconstructions – Genome Scale Models
Recent Science Viewpoint by Leroy Hood on Systems Biology and Medicine - Hood et al. (2004) Science 306:640-643.
Nature Biotechnology focus on Systems Biology.
2D-genome annotation - Palsson BO. (2004) Nat Biotech22:1218-1219.
Systems Biology in a historical perspective - Westerhoff & Palsson. (2004) Nat Biotech 22:1249-1252.
Can a Biologist Fix A Radio? - Y. Lazebnik.
Good Places to Start
Brush up on some basic biology with these recommended resources: