Lectures BENG 213 Spring 2010

Systems Biology and Bioengineering III:

Building and Simulating Dynamic Models
Lecture: Tu/Th 11:00 - 12:20 PM in PFBH 161

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2010 Schedule

Date Topic Lecturer Material
3/30

4/1

4/6
4/8

4/13
4/15

4/20
4/22

4/27
4/29

5/4
5/6

5/11
5/13

5/18
5/20

5/25
5/27

6/1
6/3

Intro, Kinetics: basic concepts

The simulation procedure, Chemical reactions

Enzyme catalysis, Open systems
Orders of Magnitude

Stoichiometric Texture
Regulation as elementary phenomena

Glycolysis
Pentose Phosphate Pathway/AMP Metabolism

Macro-Molecules: Hb and PFK
Project Guidelines

Timescale Separation
Positive Feedback

Negative Feedback
Negative Feedback and Time Delay (Oscillations)

Coupled Positive/Negative Feedback - Activated Inhibition
Noise - Master Equation to Diffusion Equation

Queuing Theory for Coupled Enzymatic Reactions
TBD

TBD
TBD

BOP

BOP

BOP
BOP

AB
AB

BOP
BOP

AB
AB

JH
JH

JH
JH

JH
JH

JH
JH





pdf1, pdf2
pdf3
pdf4, pdf5

pdf6, pdf7
pdf8

pdf9
pdf10

pdf11
pdf12, pdf13

pdf14, pdf15


















 

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