Lectures Beng 123 Winter 2011

Systems Biology and Bioengineering:

Lecture: Tu/Th 12:30 - 1:50 PM in CENTER 216
Section: Fri 2:00 - 2:50 PM in CSB 002

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2011 Schedule

Date Topic Lectures
1/4

1/6
1/7

1/11
1/13
1/14

1/18
1/20
1/21

1/25
1/27
1/28

2/1
2/3
2/4

2/8
2/10
2/11

2/15
2/17
2/20

2/22
2/24
2/25

3/1
3/3
3/4

3/8
3/10
3/11

3/15

Introduction to Systems Biology, Kinetics: basic concepts

Kinetics: Basic Concepts, the simulation procedure
Discussion Section - Linear Algebra Review

Chemical Reactions

Discussion Section - Matlab introduction

Open Systems
Enzyme Kinetics
Discussion Section - Pool Formation

Orders of Magnitude
Stoichiometric Texture
Discussion Section - Enzyme Kinetics

Regulation as elementary phenomena
Glycolysis
Discussion Section - Midterm Review

Coupling Pathways
Midterm


Building Networks
Hemoglobin
Discussion Section -

Project Overview
PFK
Discussion Section -

The Stoichiometric Matrix
The Fundamental Subspaces and SVD
Discussion Section -

The Null(S) and Extreme Pathways
Constraint-based modeling: philosophy
Discussion Section - Final Review

Final Exam, 11:30 AM - 2:30 PM

Lecture 0 - Lecture 1
Lecture 2; Lecture 3; Recording 2
Recording 3


Lecture 4; Recording 4



Lecture 6 - Recording 6
Lecture 5; Recording 5


Lecture 7; Recording 7
Lecture 8; Recording 8


Lecture 9; Recording 9
Lecture 10; Recording 10


Lecture 11; Recording 11



Lecture 12; Recording 12
Lecture 13; Recording 13

Project Presentation
Lecture 14


Lecture 15; Recording 15
Lecture 16; Recording 16


Lecture 17; Recording 17






 

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Location

417 Powell-Focht Bioengineering Hall

9500 Gilman Drive La Jolla, CA 92093-0412

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