Lectures Beng 123 Winter 2010

Systems Biology and Bioengineering:

Lecture: Tu/Th 12:30 - 1:50 PM in PFBH 191
Section: Fri 11:00 - 11:50 AM in WLH 2205

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2010 Schedule

Date Topic Lectures
1/5
1/7

1/8

1/12
1/14
1/15

1/19*
1/21
1/22

1/26
1/28
1/29

2/2*




2/4
2/5

2/9
2/11
2/12

2/16
2/18
2/19

2/23
2/25
2/26

3/2
3/4
3/5

3/9
3/11
3/12

3/16

Introduction to Systems Biology, Kinetics: basic concepts
Kinetics: Basic Concepts, the simulation procedure
Discussion Section - Linear Algebra Review and Matlab
Introduction

Chemical Reactions
Enzyme Catalysis
Discussion Section - Enzyme Kinetics and Pool Formation

Open Systems, Orders of Magnitude
Stoichiometric Texture
Discussion Section -

Regulation as elementary phenomena
Glycolysis
Discussion Section -

Pentose Pathway, (AMP Metabolism)




Macro-molecules
Discussion Section -

Midterm
Network Reconstruction
Discussion Section -

The Stoichiometric Matrix
The Fundamental Subspaces and SVD
Discussion Section -

The Null(S) and Extreme Pathways
Constraint-Based Modeling: Philosophy
Discussion Section -

Finding Optimal States: Linear Programming
Exploring capabilities/alternative optimal solutions
Discussion Section -

Metabolic Engineering
No class
Discussion Section -

Final Exam, 11:30 AM - TBA

pdf1 - pdf2
pdf3
pdf3 - pdf4


pdf5
pdf6


pdf7 - pdf8
pdf9


pdf10
pdf11


pdf12
pdf13
pdf14
pdf15





pdf16


pdf17
pdf18


pdf19
pdf20


pdf21
pdf22


pdf23





  • Starred dates, lectures will be held in EBU2 Rm 584 at the usual time, 12:30 - 1:50 PM.

Location

Location

417 Powell-Focht Bioengineering Hall

9500 Gilman Drive La Jolla, CA 92093-0412

Contact Us

Contact Us

In Silico Lab:  858-822-1144

Wet Lab:  858-246-1625

FAX:   858-822-3120

Website Concerns: sbrgit@ucsd.edu

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